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MaizeGDB BLAST

BLAST sequences of up to 10,000 total length against maize datasets.

If you have long query sequences or a large number of sequences, or if you wish to align your sequences to the MaizeGDB genome browser, consider using ZeAlign.

Other BLAST pages: maizesequence.org, PlantGDB, NCBI, Panzea

Problems? Use the old MaizeGDB BLAST.

Step 1: input your sequences (Raw, FASTA, or Genbank IDs)

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Enter your query sequences as raw sequence, FASTA data or Genbank IDs. Be sure to indicate if your query contains nucleotides or amino acids. You can also upload your sequence from a file.

Sequence type: Nucleotides Amino Acids
Enter your sequence: (example)

or upload from file:

Step 2: select datasets

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Select one or more BLAST dataset targets to search. You can see a description of each by clicking the word "describe". Click the add button to select. Selected datasets will appear in a list below the dataset dropdown. You can remove selected datasets by clicking its "remove" button.

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Description of selected dataset goes here.

B73 RefGen_v2 (MGSC)Describe

Step 3: select BLAST parameters

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Select BLAST parameters by choosing one of the preset options or by modifying the advanced settings. Click the expand button to see the advanced settings. Move your mouse over the radio button text to see a description.

Optimize for: High similarity Low similarity Short sequences

advanced settings

Step 4: select output type

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Choose the output format. Move your mouse over the radio button text to see a description.

Enhanced output BLAST table output BLAST text output

Name your sequence (optional)	(help)
E-mail (optional)	(help)			Processing...

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