MaizeGDB BLAST

Paste your sequence into the large text field and enter its name (optional). Press the "Run BLAST" button to perform a blast search against sequences in the selected database. To learn more about NCBI blast, click here.

Note: You can also try the BLAST searches available at:
NCBI BLAST, for the latest sequence sets from GenBank!
A Mu Transposon Information Resource to find out whether your sequence has been tagged by Mu!
The MaizeGDB Cornsensus BLAST Page to search against the Cornsensus sequence set!
PANZEA BLAST, for evaluating diversity data
PlantGDB for the most up-to-date sequence set!

Data Sets To Choose From
BACs - Maize BAC sequences. New! Choosing this database will show where the BLAST hits align on the MaizeGDB Genome Browser.
EST - Maize EST sequences. New! Choosing this database will show where the BLAST hits align on the MaizeGDB Genome Browser.
GSS - Maize GSS Sequences
MaizeNucleotide - Other maize nucleotide sequences (Not including EST and GSS)
Overgos - Overgos derived from maize sequences

Programs
blastn - Compares a nucleotide sequence to the nucleotide sequences in our database.
tblastn - Compares a protein sequence against the translated nucleotide sequences in our database.

Want to run blast against other plant species? Try blasting against PlantGDB!

Want to blast multiple sequences or run blastx to find protein matches? Please use the PlantGDB BLAST tool.

Currently our server will allow for sequences of 10,000 nucleotides or less. To use BLAST with larger sequences please use the PlantGDB BLAST tool.

Sequence name (optional)	Program	Database	E-value
	blastn tblastn	B73 RefGen_v1 B73 RefGen_v1 Masked B73 RefGen_v1 Super Masked	0.0001 0.001 0.01 0.1 1
Sequence (raw or FASTA format):
I only want to see sequences that are mapped (all populations).     (see an example) (example results)

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